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GECKO 3.1.2
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@edkerk edkerk released this 02 Dec 00:18
· 29 commits to main since this release
v3.1.2
cb95be2
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Learn about vigilant mode.
  • Fixes:
    • makeEcModel prevent duplicated protein pseudometabolites
    • applyKcatConstraints occassionally fills S-matrix with NaN in light ecModels (solves #344)
    • calculateFfactor handle data from PAXdb if the taxonomic ID is not 4 digits long (solves #345)
    • runDLKcat correctly handles param.path if the folder name has spaces (solves #351)
    • loadDatabases throws error if duplicate protein IDs are found
    • getSubsetEcModel requires both bigEcModel and smallGEM to have derived from the same starting GEM, and will therefore check whether all reactions from smallGEM are also present in bigEcModel. (solves #353)
  • Documentation:
    • Installation instructions are moved to the Wiki
    • Mention correct human-GEM version in HumanGEMAdapter.m
    • Replace Gitter with GitHub Discussions for asking support
  • Refactor:
    • Have ecFSEOF follow the original implementation of FSEOF (PR #356)
  • Features:
    • Navigate into new project folder after running startGECKOproject
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