Zebrafish 1.7.0

• Features:
  • update Human-GEM template to ver 1.18.0

Zebrafish 1.6.0

• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.4.0 (commit ef3e642)
  • update Human-GEM template to ver 1.17.0

Zebrafish 1.5.0

• Features:
  • update Human-GEM template to ver 1.16.0

Zebrafish 1.4.0

• Fixes (commit 4b7fe53):
  • change IDs conflicting to recent changes made to Human-GEM
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.4.0 (commit a962d62)
  • update Human-GEM template to ver 1.15.0
• Style (commit 07641a2):
  • add gene names to new field geneShortNames, as suggested in #24

Zebrafish 1.3.0

• Fixes (PR 460):
  • fix: correct MAM03882 annotation, as reported in Mouse-GEM #21
• Fixes (PR 429):
  • feat: add Acod1(Irg1) gene and associated reaction, as discussed in Mouse-GEM #20
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.3.0 (commit de6a08d)
  • update Human-GEM template to ver 1.14.0
• Style (commit db702c7):
  • change human-zebrafish ortholog file from json to tsv, as discussed in Mouse-GEM #15

Zebrafish 1.2.1

• Remove additional annotation information from .mat and .yml model files (PR #7)
  • resolves SysBioChalmers/Mouse-GEM#16
• Sync model with latest version of Human-GEM (now v1.12.0)
  • done automatically by running masterScriptZebrafishGEM script

Zebrafish 1.2.0

• Fixes/Features (commit c5a9256 , PR 382):
  • resolves issues reported in #5, by adding annotation information with updated annotateGEM function
  • change compartment abbreviation from p to x, to sync with changes made in Human-GEM PR 341
  • update ortholog pairs from Alliance of Genomes to ver 5.1.1
• Style (PR #4):
  • add .gitattributes to ensure consistent LF (\n) line endings
  • add citation
  • rename branches: master --> main, devel --> develop

Zebrafish 1.1.0

• Features (commit 9a7cefd):
  • update GEM generating script by using function updateAnimalGEM and providing annotation files in tsv format
• Style (commit 1dc2232):
  • apply MA format met/rxn identifiers in alignment with Human-GME v1.8
• Style (commit 9dceaf4):
  • add metsNoComp column to zebrafishSpecificMets.tsv

Zebrafish 1.0.0

• Style (PR #1):
  • update README.md according to the spec defined in standard-GEM ver 0.5
• Style (commit 0fbd7f3):
  • update .standard-GEM.md checklist to align with standard-GEM template ver 0.5
• Features (commit f128648):
  • add code for the GEM reconstruction
• Features (commit 806eb91):
  • upload data files
    • add zebrafish-specific pathways
    • ortholog pairs from Alliance of Genomes ver 3.1.1