Auspice 2.58.0

• Fix bug where drag-and-drop metadata columns were no longer included as tip labels (#1845)
• Fixed a bug where internal node names were sometimes omitted from the branch info modal (arrived at via shift-clicking on a branch).
  They are now always displayed irrespective of the selected tip label.
  (#1849)
• Added URL params for measurements panel controls: m_collection, m_display, m_groupBy, m_overallMean, m_threshold, and mf_*.
  See docs for more details. (#1848)

Auspice 2.57.0

• Remove hardcoded color scale for LBI (#1842)
• Any node_attr in the tree can be used as a tip label, as well as the special-cases of strain-name and "none".
  Previously we only allowed valid colorings.
  (#1668)
• The specified tip label is surfaced more prominently within the the on-hover info boxes & on-click modals.
  (#1668)
• Temporal colour scales can now use YYYY-MM-DD values (previously only numeric dates were allowed).
  Ambiguous (YYYY-MM-XX, YYYY-XX-XX) dates are allowed and the midpoint of the range will be used to choose the colour.
  (#1832, #1836)
• Parsing and error handling for URL query-encoded dates (dmin, dmax, animate) has been improved.
  (#1832)
• Div-only trees (i.e. no timetree) now hide the date / animation sections in the sidebar.
  (#1834)
• Improvements to how we use React within the measurements panel (should not result in any user-facing changes).
  (#1838)

Auspice 2.56.1

• Fix bug where app crashed if measurements JSON did not define thresholds (#1802)
• Fix bug where measurements display did not honor the default measurements_display (#1802)
• Only display download-JSON button if the dataset name can be parsed from pathname (#1804)
• Fix bug where measurements panel did not display means for measurements that had an "undefined" coloring (#1827)
• Measurement panel's x-axis min/max values are now limited by visible measurements (#1827)

Auspice 2.56.0

• We now use the reported confidence / entropy values to change the saturation of tips (circles) on the tree, which matches the behaviour seen for branches. If there is no (or very little) uncertainty in these nodes then the tips will appear the same as seen in previous versions of Auspice. (#1796)
• We no longer show the "second tree" sidebar dropdown when there are no available options. The possible options are defined by the charon/getAvailable API response and as such vary depending on the server in use. (#1795)

Auspice 2.55.1

• Small bugfix to the filter badge improvements introduced in v2.55.0 where we incorrectly showed the 2-tree display when viewing a single tree. (#1794)

Auspice 2.55.0

• A number of improvements when viewing multiple trees (tangletrees) (#1788)
  • Attributes only present on the RHS tree are now available as filter options, as well as genotypes and node names unique to the RHS tree.
  • Filter badges (shown in the header) now indicate how many matches are present in both trees (formerly only the LHS tree was considered)
  • Branch labels unique to the RHS tree are now available
• remove missing warning when dataset JSON has no .meta.geo_resolutions field (#1791)
• Add support for Node.js version 22. (#1779)

Auspice 2.54.3

• Minor improvement to the onlyPanels view - we now also hide the panel name and top-border. (#1790)

Auspice 2.54.2

• Tangletrees can now be coloured by genotype (previously such a colouring would only work for the LHS tree). This requires the genome annotation (in the dataset JSON) to be identical across both datasets. This can be especially useful when comparing trees generated from the same sequences or a similar set of sequences in order to understand the differences in tree structure. (#1785)
• Bugfix: The legend entries shown for a tangletree may not have shown values only observed in the RHS tree when the dataset was first loaded. (#1785)
• Bugfix: Multiple trees ("tanglegrams") now render correctly in Safari. (#1786)
• Bugfix: The onlyPanels URL query now hides all parts of the footer, as intended. (#1787)

Auspice 2.54.1

• Fixed a big bug where clicking on tips (and shift-clicking on branches) on the RHS tree in a tanglegram would bring up a modal detailing a node in the LHS tree. (#1783)
• Fixed a small bug where branch labels prevented you from hovering on the branch itself, a situation that was more common in tangletrees. (#1783)

Auspice 2.54.0

• Add a link-out to use datasets in Nextclade (this functionality is only enabled when running within the larger nextstrain.org ecosystem.)
  This builds on functionality introduced in Nextclade 3.7.0 allowing an Auspice dataset to be used as a nextclade dataset so that users can then add new sequences (via drag-and-drop) and see them placed on the tree. (#1776)