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Issues list

Remove "adaptive tuning parameters" wherever they are (PhyREX)
#137 opened Nov 23, 2020 by stephaneguindon
-q (--sequential) option seems to be not working
#104 opened Jun 18, 2019 by annahake
7
Compliling issues in Cygwin and Windows executable
#108 opened Jun 25, 2019 by nrosa1977
segmentation fault
#109 opened Jul 25, 2019 by yuxuansun2718
Err.: Problem with species VACV's sequence
#120 opened Feb 6, 2020 by stgoldst
5
phyml not finding a tree if option selected for random starting tree
#121 opened Feb 10, 2020 by leonperrie
2
phyml-mpi
#123 opened Apr 20, 2020 by yuyuqi-design
2
Segmentation fault (core dumped)
#124 opened May 14, 2020 by lorenapr92
Phyml-mpi stuck before starting bootstraps
#131 opened Sep 30, 2020 by ckallu
1
phytime not working on the dating_example.xml
#132 opened Oct 1, 2020 by Jigyasa3
2
How to optimize the init.values of rates for a dataset or default values are okay?
#133 opened Oct 1, 2020 by Jigyasa3
core dumped phytime on my dataset
#134 opened Oct 6, 2020 by Jigyasa3
PhyML as windows command line tool help wanted
#100 opened Apr 26, 2019 by PetraGutenbrunner
4
Memory error when using phyml with a custom model
#135 opened Oct 26, 2020 by halabikeren
3
phyML results unnormal
#138 opened Jan 28, 2021 by lwlwx
PhyML run with constrained tree
#139 opened Feb 5, 2021 by fxjonas
1
sequence ancestor reconstruction outputs protein ancs sequences with residues instead of gaps
#140 opened Feb 11, 2021 by famotsuka
Parallelizing PhyML bootstrapping
#149 opened Jul 23, 2021 by sevance
2
phytime fails to compile
#166 opened May 13, 2022 by V-Z
2
PhyML Compiling Error on Windows (MSYS2)
#167 opened May 18, 2022 by amduffy
2
Encountered an issue while loading the XML file with phytime
#170 opened Jul 7, 2022 by biozhajie
Error runing phytime
#172 opened Jul 11, 2022 by biozhajie
build with --disable-native fails
#173 opened Aug 8, 2022 by rekado
3
Optimized branch lengths flag for user tree does not work properly
#175 opened Sep 13, 2022 by GhJowkar
Constrained topology for ancestral reconstruction
#200 opened Nov 29, 2024 by Proginski
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